I (HTW) aim to provide some documentation for people who would like to rebuild all material of this book. For those who wish to generate all the time series, connectomes, and metric, please see Setup to run all customised scripts for preprocessing.
If you only want to rebuild the content of the book for the review process, or help me edit the manuscript, the instruction is as followed:
Here’s the TL;DR for building the book.
git clone --recurse-submodules https://github.com/SIMEXP/fmriprep-denoise-benchmark.git cd fmriprep-denoise-benchmark virtualenv env source env/bin/activate pip install -r binder/requirements.txt pip install . make data make book